Genetic variants shape rheumatoid arthritis-specific transcriptomic features in CD4<sup>+</sup> T cells through differential DNA methylation, explaining a substantial proportion of heritability

نویسندگان

چکیده

Objective CD4 + T cells have been suggested as the most disease-relevant cell type in rheumatoid arthritis (RA) which RA-risk non-coding variants exhibit allele-specific effects on regulation of RA-driving genes. This study aimed to understand RA-specific signatures using multi-omics data, interpreting inter-omics relationships shaping RA transcriptomic landscape. Methods We profiled genome-wide variants, gene expression and DNA methylation from 82 patients with 40 healthy controls high-throughput technologies. investigated differentially expressed genes (DEGs) differential methylated regions (DMRs) localised quantitative trait loci (QTLs) for methylation. then integrated these based individual-level correlations inspect DEG-regulating sources potential regulatory roles by a partitioned-heritability enrichment analysis association summary statistics. Results A large number DEGs were identified (n=2575), highlighting differentiation activation pathways. DMRs, preferentially located regions, correlated levels 548 mostly same topologically associating domains. In addition, expressional variances 771 83 partially explained QTLs (meQTLs) DEG-correlated respectively. moderately strongly meQTLs. enriched meQTLs, had heritability RA. Conclusion Our findings revealed that methylomic changes, driven heritability-explaining shape substantial fraction RA, reinforcing importance multidimensional approach tissues.

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ژورنال

عنوان ژورنال: Annals of the Rheumatic Diseases

سال: 2021

ISSN: ['1468-2060', '0003-4967']

DOI: https://doi.org/10.1136/annrheumdis-2020-219152